Bioinformatician (with R / Python)

1 tydzień temu


Warszawa, Mazovia, Polska Square One Resources Sp. z o.o. Pełny etat

Bioinformatician (with R / Python)

Your responsibilities

  • Scientific pipeline development
  • technologies used: R/Python + nextflow + docker / singularity, HPC
  • Various scenarios: either designing the algorithm from scratch (in tight collaboration with stakeholders) or taking stakeholder's algorithm and productionalizing it (i.e. turning it from a rough script/draft to a robust, tested, performant pipeline)
  • R/Python package development
  • Code review for other team members
  • Data integration pipelines - i.e. a stakeholder requests a report that would answer a specific set of questions based on data already present
  • Maintaining CI/CD
  • Facilitating meetings (occasionally - cross-team, internal or stakeholder meetings)
  • Gathering and refining requirements from stakeholders and other teams

Our requirements

  • 4+ years of professional experience in R or Python development
  • Python / R package development (R is preferable)
  • Good knowledge of: bash, linux
  • Experience with git and git workflows
  • Test Driven Development, good coding practices
  • CI/CD tools (gitlab CI/CD, Jenkins)
  • Containerization (docker)
  • Relational databases (PostgreSQL)
  • Experience in collaborative coding (working concurrently with other team members on the same codebase, code review & feedback system)
  • Communication skills
  • Genomics-related analyses or other biological data analysis
  • Biological (or related) educational background
  • Working in an Agile team (we are using kanban)
  • Cloud solutions (AWS)
  • Apache Spark
  • HPC
  • Non-relational databases

Aplikuj


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