Bioinformatics Data Engineering Specialist

1 miesiąc temu

Fabryczna Wrocław, Polska Holisticon Connect Pełny etat

Holisticon Connect is a Polish software development company with offices in Wrocław, Warsaw, and Cracow. We are looking for a skilled Senior Bioinformatics Data Engineer to support our operation and engineering needs.

Job Description

We are seeking a talented Senior Bioinformatics Data Engineer to join our team and impact the delivery of bioinformatics data engineering and visualizations to our Oncology R&D organization. Your work will focus on advancing our data stack, automation, and observability capabilities.

Main Responsibilities
  • Develop, execute, and maintain ETL pipelines for extracting, transforming, and loading data for use in cBio and other bioinformatics analysis and visualizations.
  • Ensure the reliability, scalability, and performance of ETL pipelines and data systems.
  • Troubleshoot and resolve issues related to data loading and integration into downstream systems.
  • Collaborate with bioinformaticians, data scientists, and other stakeholders to understand and meet the data needs and requirements of the organization.
  • Stay up-to-date with new technologies and best practices in bioinformatics.
Requirements and Qualifications
  • 5 years of relevant experience.
  • Familiarity with bioinformatics visualizations in different omics domains, including genomics, transcriptomics, proteomics, DNA methylation, etc.
  • Extensive experience with Python and Python data/scientific libraries like pandas, numpy/scipy, polars, etc.
  • Proven experience with bioinformatics visualization systems like cBioPortal, including data loading and troubleshooting.
  • Strong understanding of ETL processes and data pipeline development.
  • Ability to interact with various data sources, both structured and unstructured (e.g. HDFS, SQL, noSQL).
  • Experience working across multiple scientific compute environments to create data workflows and pipelines (e.g. HPC, cloud, Unix/Linux systems).
Desirable Skills and Qualifications
  • Experience with deploying data pipelines using orchestration services like Airflow, Prefect, AWS Glue, Dagster, etc.
  • Experience using AWS services such as S3/EBS, EC2, CloudWatch, SNS, and Lambda.
  • Understanding of software development, testing, and quality processes with experience with testing frameworks and documentation.
  • Expertise with biological/health data, especially genomics and other omics technologies.
  • Ability to understand, map, integrate, and document complex data relationships and business rules.
What We Offer
  • A competitive salary of 17,000 - 20,000 PLN gross per month or 14,000 - 16,000 PLN net per hour plus VAT for B2B employees.
  • Opportunity to work on exciting international projects in cutting-edge industries like Automotive, Biotech, IoT.
  • Possibility to develop in cloud technologies; we are a certified AWS partner.
  • Becoming part of a team that believes in putting heart into work and making it happen.
  • Respect for private life; no overtime or weekend work required.
  • Team events budget to socialize outside of work.
  • Company events to celebrate successes.
Benefits
  • Fully remote work or in-office work in Wrocław, Warsaw, or Cracow.
  • Free benefits such as Luxmed, Multisport, and life insurance in Nationale Nederlanden.
  • Attractive referral system.
  • Personal training budget with additional paid hours.
  • Passion day - an extra day off for hobbies.
  • Flexible working hours with no micro-management approach.
  • High-quality work equipment and accessories.

To apply, please submit your application online. The recruitment process includes an HR screening, a recruitment task, and a meeting with the client.

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