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Data Engineer Specialist

1 tydzień temu

Wrocław, Województwo dolnośląskie, Polska Holisticon Connect Pełny etat

At Holisticon Connect, we are a division within NEXER GROUP - a custom software development company. Our goal is to grow stronger, in competence rather than in numbers.

Job Description:

We are seeking a Senior Data Engineer to support the operation and engineering needs of cBioPortal. In this role, you will impact the delivery of bioinformatics and medical data engineering and visualizations to the Oncology R&D organization.

Key Responsibilities:
  • Loading and processing medical and biological datasets into cBioPortal using ETL, Docker, and Apache Airflow.
  • Monitoring and optimizing data pipelines, ensuring compliance with standards.
  • Standardizing external data formats for integration into the platform.
  • Collaborating with stakeholders, bioinformaticians, and infrastructure teams to resolve issues.
  • Reviewing application functionalities with users and supporting platform improvements.
Requirements:
  • Strong proficiency in Python and its data/scientific libraries (e.g., pandas, numpy/scipy, polars).
  • Solid knowledge of ETL processes and data pipeline development.
  • Experience with Docker and Apache Airflow.
  • Hands-on experience working with medical or biological data and visualizations.
  • Ability to interact with various structured and unstructured data sources (e.g., HDFS, SQL, NoSQL).
  • Experience with scientific compute environments (e.g., HPC, cloud, Unix/Linux systems).
  • Solid experience with unit testing, integration testing, and version control (Git).