Bioinformatics Data Engineer

2 dni temu


Remote, Polska Holisticon Connect Pełny etat
Job Description

We are seeking a highly skilled Senior Bioinformatics Data Engineer to join our team at Holisticon Connect. As a key member of our data engineering team, you will be responsible for developing, executing, and maintaining ETL pipelines for extracting, transforming, and loading data for use in cBio and other bioinformatics analysis and visualizations.

Key Responsibilities:
  • Design and implement scalable and reliable ETL pipelines using Python and relevant libraries.
  • Collaborate with bioinformaticians, data scientists, and other stakeholders to understand and meet the data needs and requirements of the organization.
  • Ensure the reliability, scalability, and performance of ETL pipelines and data systems.
  • Troubleshoot and resolve issues related to data loading and integration into downstream systems.

Holisticon Connect is a division within NEXER GROUP, a custom software development company with over 140 employees across Poland. We have the opportunity to work with world-renowned brands from Scandinavia, the UK, and Western Europe.

Requirements:
  • 5+ years of experience in bioinformatics data engineering or a related field.
  • Strong understanding of ETL processes and data pipeline development.
  • Expertise in Python and relevant libraries such as pandas, NumPy, and polars.
  • Familiarity with bioinformatics visualization systems like cBioPortal.
  • Experience working with AWS services such as S3/EBS, EC2, CloudWatch, SNS, and Lambda.
What We Offer:
  • A competitive salary range of $120,000 - $180,000 per year, depending on experience.
  • A dynamic and flat organizational structure with small teams and international projects.
  • A comprehensive benefits package including private healthcare, sport subscription, and training budget.
  • Modern office space with free coffee and beverages.


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